IL_8P2K_062
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAGUA(PSU)G*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2K_062 not in the Motif Atlas
- Homologous match to IL_8C3A_446
- Geometric discrepancy: 0.1725
- The information below is about IL_8C3A_446
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.2
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8P2K|1|A2|G|1169
8P2K|1|A2|G|1170
8P2K|1|A2|A|1171
8P2K|1|A2|G|1172
8P2K|1|A2|U|1173
8P2K|1|A2|A|1174
8P2K|1|A2|PSU|1175
8P2K|1|A2|G|1176
*
8P2K|1|A2|U|1187
8P2K|1|A2|G|1188
8P2K|1|A2|A|1189
8P2K|1|A2|A|1190
8P2K|1|A2|A|1191
8P2K|1|A2|C|1192
Current chains
- Chain A2
- 18s rRNA
Nearby chains
- Chain Aw
- 40S ribosomal protein S23
- Chain Az
- 60S ribosomal protein L41
- Chain B5
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: