IL_8P2K_142

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8P2K|1|B5|G|743, 8P2K|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_142 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1643

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8P2K|1|B5|G|740
8P2K|1|B5|A|741
8P2K|1|B5|A|742
8P2K|1|B5|G|743
8P2K|1|B5|G|744
8P2K|1|B5|U|745
8P2K|1|B5|G|746
8P2K|1|B5|G|747
*
8P2K|1|B5|U|808
8P2K|1|B5|G|809
8P2K|1|B5|U|810
8P2K|1|B5|U|811
8P2K|1|B5|A|812
8P2K|1|B5|C|813
8P2K|1|B5|A|814
8P2K|1|B5|G|815
8P2K|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14

Chain BS

60S ribosomal protein L18a