IL_8P2K_156

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGC,GCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_156 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.2469

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8P2K|1|B5|G|1353
8P2K|1|B5|G|1354
8P2K|1|B5|C|1355
*
8P2K|1|B5|G|1361
8P2K|1|B5|C|1362
8P2K|1|B5|C|1363

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BD

Ribosomal protein L5 eukaryotic C-terminal domain-containing protein