IL_8P2K_291

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

G(PSU)U*GUCAGC

Length

9 nucleotides

Bulged bases

8P2K|1|B5|G|4788

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_291 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.3529

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8P2K|1|B5|G|4739
8P2K|1|B5|PSU|4740
8P2K|1|B5|U|4741
*
8P2K|1|B5|G|4784
8P2K|1|B5|U|4785
8P2K|1|B5|C|4786
8P2K|1|B5|A|4787
8P2K|1|B5|G|4788
8P2K|1|B5|C|4789

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

Ribosomal protein L24

Chain Bd

60S ribosomal protein L31