IL_8P2K_347

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_347 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1012

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8P2K|1|B5|G|2201
8P2K|1|B5|U|2202
8P2K|1|B5|A|2203
8P2K|1|B5|G|2204
8P2K|1|B5|U|2205
8P2K|1|B5|A2M|2206
8P2K|1|B5|OMG|2207
*
8P2K|1|B5|C|3590
8P2K|1|B5|G|3591
8P2K|1|B5|A|3592
8P2K|1|B5|A|3593
8P2K|1|B5|A|3594
8P2K|1|B5|C|3595

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BK

Glucose-6-phosphate isomerase

Chain BP

uL22