IL_8P2K_349

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AACAA(OMU)G*C(PSU)A(PSU)

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_349 not in the Motif Atlas

Homologous match to IL_8C3A_080

Geometric discrepancy: 0.2816

The information below is about IL_8C3A_080

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8P2K|1|B5|A|2675
8P2K|1|B5|A|2676
8P2K|1|B5|C|2677
8P2K|1|B5|A|2678
8P2K|1|B5|A|2679
8P2K|1|B5|OMU|2680
8P2K|1|B5|G|2681
*
8P2K|1|B5|C|3582
8P2K|1|B5|PSU|3583
8P2K|1|B5|A|3584
8P2K|1|B5|PSU|3585

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

uL22

Chain Bd

60S ribosomal protein L31