IL_8P2K_366

3D structure

PDB id

8P2K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex of translating ribosome, NAC and METAP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUA(PSU)(OMG)*CGAAG

Length

11 nucleotides

Bulged bases

8P2K|1|B5|U|4380, 8P2K|1|B5|PSU|4382

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P2K_366 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.2959

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

8P2K|1|B5|U|4378
8P2K|1|B5|G|4379
8P2K|1|B5|U|4380
8P2K|1|B5|A|4381
8P2K|1|B5|PSU|4382
8P2K|1|B5|OMG|4383
*
8P2K|1|B5|C|4408
8P2K|1|B5|G|4409
8P2K|1|B5|A|4410
8P2K|1|B5|A|4411
8P2K|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

Ribosomal protein L24

Chain Bd

60S ribosomal protein L31