IL_8P2K_369
3D structure
- PDB id
- 8P2K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex of translating ribosome, NAC and METAP1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACAGGA(OMU)UG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 8P2K|1|A2|G|1286, 8P2K|1|A2|U|1315
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P2K_369 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2995
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8P2K|1|A2|G|1282
8P2K|1|A2|A|1283
8P2K|1|A2|C|1284
8P2K|1|A2|A|1285
8P2K|1|A2|G|1286
8P2K|1|A2|G|1287
8P2K|1|A2|A|1288
8P2K|1|A2|OMU|1289
8P2K|1|A2|U|1290
8P2K|1|A2|G|1291
*
8P2K|1|A2|C|1310
8P2K|1|A2|U|1311
8P2K|1|A2|C|1312
8P2K|1|A2|G|1313
8P2K|1|A2|A|1314
8P2K|1|A2|U|1315
8P2K|1|A2|U|1316
8P2K|1|A2|C|1317
Current chains
- Chain A2
- 18s rRNA
Nearby chains
- Chain AC
- Ribosomal protein S27a
- Chain AG
- 40S ribosomal protein S29
- Chain Aj
- S10_plectin domain-containing protein
- Chain Al
- 40S ribosomal protein S12
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