IL_8P4V_039

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AUUA*UUCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_039 not in the Motif Atlas

Homologous match to IL_8P9A_269

Geometric discrepancy: 0.0869

The information below is about IL_8P9A_269

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8P4V|1|1|A|1006
8P4V|1|1|U|1007
8P4V|1|1|U|1008
8P4V|1|1|A|1009
*
8P4V|1|1|U|1041
8P4V|1|1|U|1042
8P4V|1|1|C|1043
8P4V|1|1|U|1044

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain m

60S ribosomal protein L5

Chain r

60S ribosomal protein L10