IL_8P4V_074
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_074 not in the Motif Atlas
- Homologous match to IL_8P9A_302
- Geometric discrepancy: 0.0623
- The information below is about IL_8P9A_302
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89862.1
- Basepair signature
- cWW-L-tHS-L-R-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8P4V|1|1|A|1883
8P4V|1|1|A|1884
8P4V|1|1|U|1885
8P4V|1|1|A|1886
8P4V|1|1|A|1887
8P4V|1|1|U|1888
8P4V|1|1|G|1889
*
8P4V|1|1|C|2346
8P4V|1|1|U|2347
8P4V|1|1|A|2348
8P4V|1|1|U|2349
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AE
- 60S ribosomal protein L31-A
- Chain k
- 60S ribosomal protein L3
- Chain x
- 60S ribosomal protein L17-A
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