IL_8P4V_172

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_172 not in the Motif Atlas

Geometric match to IL_4LFB_060

Geometric discrepancy: 0.2633

The information below is about IL_4LFB_060

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8P4V|1|A|U|517
8P4V|1|A|A|518
8P4V|1|A|C|519
8P4V|1|A|A|520
*
8P4V|1|A|U|532
8P4V|1|A|U|533
8P4V|1|A|A|534
8P4V|1|A|A|535

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S9-A

Chain Z

40S ribosomal protein S24-A