IL_8P4V_227
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_227 not in the Motif Atlas
- Homologous match to IL_8P9A_457
- Geometric discrepancy: 0.0785
- The information below is about IL_8P9A_457
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.15
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
8P4V|1|A|C|1653
8P4V|1|A|G|1654
8P4V|1|A|A|1655
8P4V|1|A|U|1656
*
8P4V|1|A|A|1744
8P4V|1|A|G|1745
8P4V|1|A|A|1746
8P4V|1|A|G|1747
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 6
- 60S ribosomal protein L23-A
- Chain AO
- 60S ribosomal protein L41-A
- Chain Y
- 40S ribosomal protein S23-A
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