IL_8P4V_258
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8P4V|1|AR|A|933, 8P4V|1|AR|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_258 not in the Motif Atlas
- Homologous match to IL_8P9A_256
- Geometric discrepancy: 0.0472
- The information below is about IL_8P9A_256
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 10
Unit IDs
8P4V|1|AR|G|805
8P4V|1|AR|A|806
8P4V|1|AR|A|807
8P4V|1|AR|A|808
8P4V|1|AR|G|809
*
8P4V|1|AR|C|931
8P4V|1|AR|U|932
8P4V|1|AR|A|933
8P4V|1|AR|G|934
8P4V|1|AR|U|935
8P4V|1|AR|A|936
8P4V|1|AR|G|937
8P4V|1|AR|C|938
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CF
- 60S ribosomal protein L4-A
- Chain CN
- 60S ribosomal protein L13-A
- Chain CP
- 60S ribosomal protein L15-A
- Chain DC
- 60S ribosomal protein L28
- Chain DL
- 60S ribosomal protein L37-A
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