IL_8P4V_270
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 8P4V|1|AR|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_270 not in the Motif Atlas
- Homologous match to IL_8P9A_268
- Geometric discrepancy: 0.0577
- The information below is about IL_8P9A_268
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_26222.2
- Basepair signature
- cWW-cWS-cSH-tWH-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8P4V|1|AR|G|999
8P4V|1|AR|C|1000
8P4V|1|AR|G|1001
8P4V|1|AR|A|1002
8P4V|1|AR|A|1003
8P4V|1|AR|U|1004
*
8P4V|1|AR|A|1046
8P4V|1|AR|A|1047
8P4V|1|AR|A|1048
8P4V|1|AR|C|1049
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain AS
- 5S ribosomal RNA; 5S rRNA
- Chain CG
- 60S ribosomal protein L5
- Chain CL
- 60S ribosomal protein L10
- Chain CV
- 60S ribosomal protein L21-A
Coloring options: