IL_8P4V_280
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CUCAUCAG*CUCAAG
- Length
- 14 nucleotides
- Bulged bases
- 8P4V|1|AR|U|1191, 8P4V|1|AR|C|1192, 8P4V|1|AR|C|1316, 8P4V|1|AR|A|1318
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_280 not in the Motif Atlas
- Homologous match to IL_8P9A_279
- Geometric discrepancy: 0.0521
- The information below is about IL_8P9A_279
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77278.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8P4V|1|AR|C|1187
8P4V|1|AR|U|1188
8P4V|1|AR|C|1189
8P4V|1|AR|A|1190
8P4V|1|AR|U|1191
8P4V|1|AR|C|1192
8P4V|1|AR|A|1193
8P4V|1|AR|G|1194
*
8P4V|1|AR|C|1314
8P4V|1|AR|U|1315
8P4V|1|AR|C|1316
8P4V|1|AR|A|1317
8P4V|1|AR|A|1318
8P4V|1|AR|G|1319
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CK
- 60S ribosomal protein L9-A
- Chain CO
- 60S ribosomal protein L14-A
- Chain CQ
- 60S ribosomal protein L16-A
- Chain CU
- 60S ribosomal protein L20-A
- Chain DO
- Ubiquitin-60S ribosomal protein L40
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