IL_8P4V_282

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

8P4V|1|AR|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_282 not in the Motif Atlas

Homologous match to IL_8P9A_281

Geometric discrepancy: 0.0646

The information below is about IL_8P9A_281

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

8P4V|1|AR|G|1207
8P4V|1|AR|U|1208
8P4V|1|AR|G|1209
*
8P4V|1|AR|C|1296
8P4V|1|AR|C|1297

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AS

5S ribosomal RNA; 5S rRNA

Chain CK

60S ribosomal protein L9-A

Chain CU

60S ribosomal protein L20-A

Chain DO

Ubiquitin-60S ribosomal protein L40