IL_8P4V_310

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCU*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_310 not in the Motif Atlas

Homologous match to IL_8P9A_308

Geometric discrepancy: 0.0581

The information below is about IL_8P9A_308

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

8P4V|1|AR|G|1940
8P4V|1|AR|C|1941
8P4V|1|AR|U|1942
*
8P4V|1|AR|A|2106
8P4V|1|AR|A|2107
8P4V|1|AR|C|2108

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CT

60S ribosomal protein L19-A

Chain s8

40S ribosomal protein S8-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA