IL_8P4V_380

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GUUA*UUUC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_380 not in the Motif Atlas

Homologous match to IL_8P9A_380

Geometric discrepancy: 0.0736

The information below is about IL_8P9A_380

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

8P4V|1|sR|G|109
8P4V|1|sR|U|110
8P4V|1|sR|U|111
8P4V|1|sR|A|112
*
8P4V|1|sR|U|302
8P4V|1|sR|U|303
8P4V|1|sR|U|304
8P4V|1|sR|C|305

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain s4

40S ribosomal protein S4-A

Chain s8

40S ribosomal protein S8-A