IL_8P4V_394

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GGG*CGAUUC

Length

9 nucleotides

Bulged bases

8P4V|1|sR|U|380

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_394 not in the Motif Atlas

Homologous match to IL_8P9A_393

Geometric discrepancy: 0.0593

The information below is about IL_8P9A_393

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93336.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

4

Unit IDs

8P4V|1|sR|G|363
8P4V|1|sR|G|364
8P4V|1|sR|G|365
*
8P4V|1|sR|C|376
8P4V|1|sR|G|377
8P4V|1|sR|A|378
8P4V|1|sR|U|379
8P4V|1|sR|U|380
8P4V|1|sR|C|381

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A