IL_8P4V_425
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CGAAG*CGUAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_425 not in the Motif Atlas
- Homologous match to IL_8P9A_424
- Geometric discrepancy: 0.0626
- The information below is about IL_8P9A_424
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.7
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
8P4V|1|sR|C|990
8P4V|1|sR|G|991
8P4V|1|sR|A|992
8P4V|1|sR|A|993
8P4V|1|sR|G|994
*
8P4V|1|sR|C|1010
8P4V|1|sR|G|1011
8P4V|1|sR|U|1012
8P4V|1|sR|A|1013
8P4V|1|sR|G|1014
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CD
- 60S ribosomal protein L2-A
- Chain c4
- 40S ribosomal protein S14-B
- Chain d6
- Small ribosomal subunit protein eS26B
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