IL_8P4V_433
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CCU*GCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_433 not in the Motif Atlas
- Homologous match to IL_8P9A_432
- Geometric discrepancy: 0.0975
- The information below is about IL_8P9A_432
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
8P4V|1|sR|C|1173
8P4V|1|sR|C|1174
8P4V|1|sR|U|1175
*
8P4V|1|sR|G|1464
8P4V|1|sR|C|1465
8P4V|1|sR|G|1466
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain c6
- 40S ribosomal protein S16-A
- Chain c8
- 40S ribosomal protein S18-A
- Chain c9
- 40S ribosomal protein S19-A
- Chain d0
- Small ribosomal subunit protein uS10
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