IL_8P4V_446
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CUA*UGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8P4V|1|sR|U|1390
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P4V_446 not in the Motif Atlas
- Geometric match to IL_4V88_458
- Geometric discrepancy: 0.1049
- The information below is about IL_4V88_458
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- Major groove platform
- Motif group
- IL_58032.1
- Basepair signature
- cWW-tWH-cWW-L-L-R
- Number of instances in this motif group
- 2
Unit IDs
8P4V|1|sR|C|1389
8P4V|1|sR|U|1390
8P4V|1|sR|A|1391
*
8P4V|1|sR|U|1407
8P4V|1|sR|G|1408
8P4V|1|sR|G|1409
8P4V|1|sR|A|1410
8P4V|1|sR|A|1411
8P4V|1|sR|G|1412
Current chains
- Chain sR
- 18S ribosomal RNA
Nearby chains
- Chain Rb
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain c6
- 40S ribosomal protein S16-A
- Chain c7
- 40S ribosomal protein S17-A
- Chain s5
- 40S ribosomal protein S5
Coloring options: