3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
CGCU*AAAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P4V_454 not in the Motif Atlas
Homologous match to IL_8P9A_455
Geometric discrepancy: 0.0682
The information below is about IL_8P9A_455
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_64231.5
Basepair signature
cWW-cWW-L-R-L-cWW
Number of instances in this motif group
11

Unit IDs

8P4V|1|sR|C|1644
8P4V|1|sR|G|1645
8P4V|1|sR|C|1646
8P4V|1|sR|U|1647
*
8P4V|1|sR|A|1753
8P4V|1|sR|A|1754
8P4V|1|sR|A|1755
8P4V|1|sR|A|1756
8P4V|1|sR|G|1757

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain AR
Large subunit ribosomal RNA; LSU rRNA
Chain DP
60S ribosomal protein L41-A
Chain d3
40S ribosomal protein S23-A
Chain e0
40S ribosomal protein S30-A

Coloring options:


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