IL_8P4V_455

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UAC*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_455 not in the Motif Atlas

Homologous match to IL_8P9A_456

Geometric discrepancy: 0.0706

The information below is about IL_8P9A_456

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

8P4V|1|sR|U|1650
8P4V|1|sR|A|1651
8P4V|1|sR|C|1652
*
8P4V|1|sR|G|1748
8P4V|1|sR|A|1749
8P4V|1|sR|A|1750

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain AR

Large subunit ribosomal RNA; LSU rRNA

Chain DP

60S ribosomal protein L41-A

Chain d3

40S ribosomal protein S23-A