IL_8P4V_466

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GG*UUUC

Length

6 nucleotides

Bulged bases

8P4V|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_466 not in the Motif Atlas

Homologous match to IL_8P9A_293

Geometric discrepancy: 0.2666

The information below is about IL_8P9A_293

Detailed Annotation

Major groove platform related

Broad Annotation

Major groove platform related

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

8P4V|1|1|G|1623
8P4V|1|1|G|1624
*
8P4V|1|1|U|1819
8P4V|1|1|U|1820
8P4V|1|1|U|1821
8P4V|1|1|C|1822

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L34-A