IL_8P4V_480

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_480 not in the Motif Atlas

Homologous match to IL_8CRE_419

Geometric discrepancy: 0.2241

The information below is about IL_8CRE_419

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

8P4V|1|sR|U|517
8P4V|1|sR|A|518
*
8P4V|1|sR|U|533
8P4V|1|sR|A|534
8P4V|1|sR|A|535

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s9

40S ribosomal protein S9-A