IL_8P4V_488

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8P4V|1|sR|A|1346, 8P4V|1|sR|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P4V_488 not in the Motif Atlas

Homologous match to IL_8P9A_445

Geometric discrepancy: 0.0999

The information below is about IL_8P9A_445

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78800.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8P4V|1|sR|A|1345
8P4V|1|sR|A|1346
8P4V|1|sR|U|1347
8P4V|1|sR|A|1348
*
8P4V|1|sR|U|1377
8P4V|1|sR|U|1378
8P4V|1|sR|C|1379
8P4V|1|sR|U|1380

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

Small ribosomal subunit protein uS10