IL_8P85_056
3D structure
- PDB id
- 8P85 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Fluorolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 8P85|1|1|C|1391
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P85_056 not in the Motif Atlas
- Geometric match to IL_8P9A_287
- Geometric discrepancy: 0.045
- The information below is about IL_8P9A_287
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.2
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
8P85|1|1|U|1388
8P85|1|1|G|1389
8P85|1|1|A|1390
8P85|1|1|C|1391
8P85|1|1|G|1392
8P85|1|1|A|1393
8P85|1|1|A|1394
8P85|1|1|G|1395
*
8P85|1|1|U|1415
8P85|1|1|C|1416
8P85|1|1|G|1417
8P85|1|1|A|1418
8P85|1|1|A|1419
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain AF
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L4-A
- Chain n
- 60S ribosomal protein L6-A
- Chain x
- 60S ribosomal protein L17-A
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