3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGACGAAG*UCGAA
Length
13 nucleotides
Bulged bases
8P9A|1|AR|C|1391
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

8P9A|1|AR|U|1388
8P9A|1|AR|G|1389
8P9A|1|AR|A|1390
8P9A|1|AR|C|1391
8P9A|1|AR|G|1392
8P9A|1|AR|A|1393
8P9A|1|AR|A|1394
8P9A|1|AR|G|1395
*
8P9A|1|AR|U|1415
8P9A|1|AR|C|1416
8P9A|1|AR|G|1417
8P9A|1|AR|A|1418
8P9A|1|AR|A|1419

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain AT
5.8S ribosomal RNA; 5.8S rRNA
Chain CF
60S ribosomal protein L4-A
Chain CH
60S ribosomal protein L6-A
Chain CR
60S ribosomal protein L17-A
Chain DA
60S ribosomal protein L26-A
Chain DG
60S ribosomal protein L32

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 7.8502 s