IL_8P8M_020
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- GAAUGUAG*UAUUAUAGC
- Length
- 17 nucleotides
- Bulged bases
- 8P8M|1|A|U|534, 8P8M|1|A|U|558
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_020 not in the Motif Atlas
- Homologous match to IL_5TBW_020
- Geometric discrepancy: 0.0898
- The information below is about IL_5TBW_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07703.1
- Basepair signature
- cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8P8M|1|A|G|531
8P8M|1|A|A|532
8P8M|1|A|A|533
8P8M|1|A|U|534
8P8M|1|A|G|535
8P8M|1|A|U|536
8P8M|1|A|A|537
8P8M|1|A|G|538
*
8P8M|1|A|U|553
8P8M|1|A|A|554
8P8M|1|A|U|555
8P8M|1|A|U|556
8P8M|1|A|A|557
8P8M|1|A|U|558
8P8M|1|A|A|559
8P8M|1|A|G|560
8P8M|1|A|C|561
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JU
- 60S ribosomal protein L14-A
- Chain QS
- 60S ribosomal protein L20-A
Coloring options: