IL_8P8M_054
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CGU*AGUG
- Length
- 7 nucleotides
- Bulged bases
- 8P8M|1|A|G|1429
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_054 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.0791
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
8P8M|1|A|C|1376
8P8M|1|A|G|1377
8P8M|1|A|U|1378
*
8P8M|1|A|A|1428
8P8M|1|A|G|1429
8P8M|1|A|U|1430
8P8M|1|A|G|1431
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LH
- 60S ribosomal protein L4-A
- Chain RA
- 60S ribosomal protein L28
- Chain RE
- 60S ribosomal protein L32
Coloring options: