IL_8P8M_060
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 8P8M|1|A|A|1588, 8P8M|1|A|A|1589
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_060 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.0843
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
8P8M|1|A|C|1532
8P8M|1|A|U|1533
8P8M|1|A|A|1534
8P8M|1|A|A|1535
8P8M|1|A|G|1536
*
8P8M|1|A|C|1585
8P8M|1|A|G|1586
8P8M|1|A|A|1587
8P8M|1|A|A|1588
8P8M|1|A|A|1589
8P8M|1|A|G|1590
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LD
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L2-A
- Chain RG
- 60S ribosomal protein L34-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: