IL_8P8M_071
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- AAUAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_071 not in the Motif Atlas
- Homologous match to IL_8C3A_080
- Geometric discrepancy: 0.1023
- The information below is about IL_8C3A_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
8P8M|1|A|A|1883
8P8M|1|A|A|1884
8P8M|1|A|U|1885
8P8M|1|A|A|1886
8P8M|1|A|A|1887
8P8M|1|A|U|1888
8P8M|1|A|G|1889
*
8P8M|1|A|C|2346
8P8M|1|A|U|2347
8P8M|1|A|A|2348
8P8M|1|A|U|2349
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L3
- Chain QO
- 60S ribosomal protein L17-A
- Chain RD
- 60S ribosomal protein L31-A
Coloring options: