IL_8P8M_112
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P8M_112 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.0868
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8P8M|1|A|C|3018
8P8M|1|A|U|3019
8P8M|1|A|U|3020
8P8M|1|A|A|3021
8P8M|1|A|G|3022
8P8M|1|A|U|3023
8P8M|1|A|A|3024
8P8M|1|A|C|3025
*
8P8M|1|A|G|3030
8P8M|1|A|G|3031
8P8M|1|A|A|3032
8P8M|1|A|A|3033
8P8M|1|A|C|3034
8P8M|1|A|A|3035
8P8M|1|A|G|3036
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L3
- Chain LM
- 60S ribosomal protein L9-A
- Chain QV
- 60S ribosomal protein L23-A
- Chain RO
- Ubiquitin-60S ribosomal protein L40
Coloring options: