IL_8P8M_128

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8P8M|1|A|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8M_128 not in the Motif Atlas

Homologous match to IL_8C3A_138

Geometric discrepancy: 0.0957

The information below is about IL_8C3A_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8P8M|1|A|G|3328
8P8M|1|A|U|3329
8P8M|1|A|A|3330
*
8P8M|1|A|U|3373
8P8M|1|A|U|3374
8P8M|1|A|A|3375
8P8M|1|A|A|3376
8P8M|1|A|G|3377
8P8M|1|A|C|3378

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QW

60S ribosomal protein L24-A

Chain RD

60S ribosomal protein L31-A