3D structure

PDB id
8P8N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
GUAGUAG*CGAAAC
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8P8N_058 not in the Motif Atlas
Homologous match to IL_5TBW_061
Geometric discrepancy: 0.0457
The information below is about IL_5TBW_061
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.3
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

8P8N|1|A|G|1444
8P8N|1|A|U|1445
8P8N|1|A|A|1446
8P8N|1|A|G|1447
8P8N|1|A|U|1448
8P8N|1|A|A|1449
8P8N|1|A|G|1450
*
8P8N|1|A|C|2354
8P8N|1|A|G|2355
8P8N|1|A|A|2356
8P8N|1|A|A|2357
8P8N|1|A|A|2358
8P8N|1|A|C|2359

Current chains

Chain A
25S rRNA

Nearby chains

Chain LD
5.8S ribosomal RNA; 5.8S rRNA
Chain LH
60S ribosomal protein L4-A
Chain QO
60S ribosomal protein L17-A

Coloring options:


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