IL_8P8N_115

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

8P8N|1|A|A|3130

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8P8N_115 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.067

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

8P8N|1|A|A|3103
8P8N|1|A|U|3104
8P8N|1|A|U|3105
8P8N|1|A|A|3106
8P8N|1|A|U|3107
*
8P8N|1|A|A|3127
8P8N|1|A|G|3128
8P8N|1|A|A|3129
8P8N|1|A|A|3130
8P8N|1|A|U|3131

Current chains

Chain A

25S rRNA

Nearby chains

Chain JW

60S ribosomal protein L16-A

Chain LM

60S ribosomal protein L9-A

Chain RO

Ubiquitin-60S ribosomal protein L40