IL_8P9A_046
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 8P9A|1|1|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8P9A_046 not in the Motif Atlas
- Homologous match to IL_8P9A_276
- Geometric discrepancy: 0.0435
- The information below is about IL_8P9A_276
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8P9A|1|1|U|1167
8P9A|1|1|U|1168
8P9A|1|1|A|1169
8P9A|1|1|A|1170
8P9A|1|1|G|1171
*
8P9A|1|1|C|1328
8P9A|1|1|U|1329
8P9A|1|1|A|1330
8P9A|1|1|U|1331
8P9A|1|1|A|1332
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 3
- 5S ribosomal RNA; 5S rRNA
- Chain AF
- 60S ribosomal protein L32
- Chain AG
- 60S ribosomal protein L33-A
- Chain o
- 60S ribosomal protein L7-A
- Chain y
- 60S ribosomal protein L18-A
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