IL_8P9A_236

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

8P9A|1|AR|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92634.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

8P9A|1|AR|A|123
8P9A|1|AR|U|124
*
8P9A|1|AR|A|144
8P9A|1|AR|G|145
8P9A|1|AR|U|146
8P9A|1|AR|U|147
8P9A|1|AR|G|148
8P9A|1|AR|U|149

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain AT

5.8S ribosomal RNA; 5.8S rRNA

Chain CJ

60S ribosomal protein L8-A

Chain CP

60S ribosomal protein L15-A

Chain DJ

60S ribosomal protein L35-A