3D structure

PDB id
8P9A (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Methyllissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
CAACG*UUG
Length
8 nucleotides
Bulged bases
8P9A|1|AR|U|3259
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_82741.2
Basepair signature
cWW-L-cWW-L-L
Number of instances in this motif group
3

Unit IDs

8P9A|1|AR|C|3225
8P9A|1|AR|A|3226
8P9A|1|AR|A|3227
8P9A|1|AR|C|3228
8P9A|1|AR|G|3229
*
8P9A|1|AR|U|3258
8P9A|1|AR|U|3259
8P9A|1|AR|G|3260

Current chains

Chain AR
25S ribosomal RNA

Nearby chains

Chain CH
60S ribosomal protein L6-A
Chain CO
60S ribosomal protein L14-A
Chain CQ
60S ribosomal protein L16-A
Chain DH
60S ribosomal protein L33-A

Coloring options:

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