Motif IL_62925.1 Version IL_62925.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 1-7 | 5-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_8D29_003 | 8D29 | 0.5908 | 0 | C | RNA (34-MER) | C | 21 | C | 22 | C | 23 | U | 24 | U | 25 | * | A | 10 | G | 11 | cWW | ncWW |
| 2 | IL_8P9A_353 | 8P9A | 0.1413 | 1 | AR | LSU rRNA | C | 3225 | A | 3226 | A | 3227 | C | 3228 | G | 3229 | * | U | 3258 | G | 3260 | cWW | cWW |
| 3 | IL_8OI5_124 | 8OI5 | 0.0000 | 1 | 1 | LSU rRNA | C | 3190 | A | 3191 | A | 3192 | C | 3193 | G | 3194 | * | U | 3223 | G | 3225 | cWW | cWW |
| 4 | IL_9AXU_116 | 9AXU | 0.3075 | 1 | 2 | LSU rRNA | C | 3325 | G | 3326 | A | 3327 | U | 3328 | G | 3329 | * | U | 3358 | G | 3360 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAACG*UUG | 2 |
| CCCUU*AG | 1 |
| CGAUG*UUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAC*U | 2 |
| CCU* | 1 |
| GAU*U | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-L-cWW-L-L
- Heat map statistics
- Min 0.14 | Avg 0.32 | Max 0.64
Coloring options: