IL_8P9A_420

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

8P9A|1|sR|G|876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8P9A|1|sR|C|874
8P9A|1|sR|G|875
8P9A|1|sR|G|876
8P9A|1|sR|G|877
8P9A|1|sR|G|878
*
8P9A|1|sR|C|950
8P9A|1|sR|A|951
8P9A|1|sR|A|952
8P9A|1|sR|G|953

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain DE

60S ribosomal protein L30

Chain c3

40S ribosomal protein S13

Chain d6

Small ribosomal subunit protein eS26B

Chain s1

40S ribosomal protein S1-A