IL_8PEG_104

3D structure

PDB id

8PEG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8PEG|1|7|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PEG_104 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8PEG|1|7|C|2636
8PEG|1|7|U|2637
8PEG|1|7|G|2638
8PEG|1|7|A|2639
8PEG|1|7|G|2640
*
8PEG|1|7|C|2774
8PEG|1|7|G|2775
8PEG|1|7|A|2776
8PEG|1|7|G|2777
8PEG|1|7|A|2778
8PEG|1|7|U|2779
8PEG|1|7|G|2780
8PEG|1|7|A|2781
8PEG|1|7|G|2782

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain m

50S ribosomal protein L13