IL_8PFR_034
3D structure
- PDB id
- 8PFR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39L integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8PFR|1|A|G|908, 8PFR|1|A|A|920, 8PFR|1|A|A|921
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8PFR_034 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0835
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8PFR|1|A|G|907
8PFR|1|A|G|908
8PFR|1|A|G|909
*
8PFR|1|A|U|919
8PFR|1|A|A|920
8PFR|1|A|A|921
8PFR|1|A|U|922
8PFR|1|A|C|923
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain JV
- 60S ribosomal protein L15-A
- Chain LF
- 60S ribosomal protein L2-A
- Chain QO
- 60S ribosomal protein L17-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: