IL_8PFR_114

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UAAUU*ACCA

Length

9 nucleotides

Bulged bases

8PFR|1|A|C|3092

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_114 not in the Motif Atlas

Homologous match to IL_5TBW_117

Geometric discrepancy: 0.0759

The information below is about IL_5TBW_117

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

8PFR|1|A|U|3047
8PFR|1|A|A|3048
8PFR|1|A|A|3049
8PFR|1|A|U|3050
8PFR|1|A|U|3051
*
8PFR|1|A|A|3091
8PFR|1|A|C|3092
8PFR|1|A|C|3093
8PFR|1|A|A|3094

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QV

60S ribosomal protein L23-A

Chain QW

60S ribosomal protein L24-A