IL_8PFR_130

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

8PFR|1|A|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PFR_130 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.0719

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8PFR|1|A|G|3328
8PFR|1|A|U|3329
8PFR|1|A|A|3330
*
8PFR|1|A|U|3373
8PFR|1|A|U|3374
8PFR|1|A|A|3375
8PFR|1|A|A|3376
8PFR|1|A|G|3377
8PFR|1|A|C|3378

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QW

60S ribosomal protein L24-A

Chain RD

60S ribosomal protein L31-A