IL_8PHJ_100

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

8PHJ|1|a|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_100 not in the Motif Atlas

Homologous match to IL_5J7L_282

Geometric discrepancy: 0.0652

The information below is about IL_5J7L_282

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

8PHJ|1|a|G|1031
8PHJ|1|a|A|1032
8PHJ|1|a|U|1033
8PHJ|1|a|G|1034
*
8PHJ|1|a|C|1121
8PHJ|1|a|G|1122
8PHJ|1|a|C|1123

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain b

5S ribosomal RNA; 5S rRNA

Chain l

Large ribosomal subunit protein uL16