IL_8PHJ_103

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

8PHJ|1|a|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_103 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.1745

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

8PHJ|1|a|G|1059
8PHJ|1|a|U|1060
8PHJ|1|a|U|1061
8PHJ|1|a|G|1062
*
8PHJ|1|a|C|1076
8PHJ|1|a|A|1077
8PHJ|1|a|U|1078
8PHJ|1|a|C|1079

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 5

Large ribosomal subunit protein uL10

Chain 6

Large ribosomal subunit protein uL11

Chain l

Large ribosomal subunit protein uL16