IL_8PHJ_131

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8PHJ|1|a|A|1801, 8PHJ|1|a|C|1816, 8PHJ|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_131 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0609

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8PHJ|1|a|U|1798
8PHJ|1|a|G|1799
8PHJ|1|a|C|1800
8PHJ|1|a|A|1801
8PHJ|1|a|A|1802
8PHJ|1|a|A|1803
8PHJ|1|a|C|1804
*
8PHJ|1|a|G|1813
8PHJ|1|a|G|1814
8PHJ|1|a|A|1815
8PHJ|1|a|C|1816
8PHJ|1|a|G|1817
8PHJ|1|a|U|1818
8PHJ|1|a|A|1819
8PHJ|1|a|U|1820
8PHJ|1|a|A|1821

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2