IL_8PHJ_162

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8PHJ|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8PHJ_162 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.081

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8PHJ|1|a|C|2636
8PHJ|1|a|U|2637
8PHJ|1|a|G|2638
8PHJ|1|a|A|2639
8PHJ|1|a|G|2640
*
8PHJ|1|a|C|2774
8PHJ|1|a|G|2775
8PHJ|1|a|A|2776
8PHJ|1|a|G|2777
8PHJ|1|a|A|2778
8PHJ|1|a|U|2779
8PHJ|1|a|G|2780
8PHJ|1|a|A|2781
8PHJ|1|a|G|2782

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain i

Large ribosomal subunit protein uL13